PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G100800.1
Common NameB456_004G100800, LOC105790950
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 151aa    MW: 16669.5 Da    PI: 9.096
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G100800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000114264123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C++ F ++  L  H++ H
  Gorai.004G100800.1 42 FSCNYCKRKFYSSQALGGHQNAH 64
                        89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.78E-64069No hitNo description
PROSITE profilePS5015711.0744269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MDYQPNNSLR LSLSNNQPNL ELVLEPSSSS SSPHIPAAPR IFSCNYCKRK FYSSQALGGH  60
QNAHKLERTL AKKSRELSSI VRAHGGSSIR GSSHDQSMQS PMATFEQHGR AGRFAGEMSY  120
GKTDVNYGSM GYRNENVEDE FSQLDLSLRL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474223.11e-108PREDICTED: zinc finger protein 2
RefseqXP_012474225.11e-108PREDICTED: zinc finger protein 2
SwissprotQ392619e-33ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A0D2MW771e-108A0A0D2MW77_G
STRINGVIT_11s0052g01120.t012e-54(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66212844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-23zinc finger protein 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]